Kinnersley, M, J Wenger, E Kroll, J Adams, G Sherlock F Rosenzweig (2014) Ex uno plures: Clonal reinforcement drives evolution of a simple microbial community. PLoS Genetics 10(6):e1004430.
Nagarajan, S, AL Kruckeberg, K Schmidt, E Kroll, M Hamilton, K McInnerney, R Summers, T Taylor, F Rosenzweig (2014) Uncoupling reproduction from metabolism extends chronological lifespan in yeast. PNAS (USA) Plus 111(15):E1538-1547.
Skorupa, DJ, RW Castenholz, A Mazurie, C Carey, F Rosenzweig, TR McDermott (2013) In situ gene expression profiling of the thermoacidophilic alga Cyanidioschyzon in relation to visible and UV iradiance. Environ Microbiol. doi: 10.1111/1462-2920.12317
Dunn, B, T Paulish, A. Stanbery, J. Piotrowski, G. Koniges, E Kroll, EJ Louis, G Liti, G Sherlock, F Rosenzweig (2013) Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. PLoS Genetics 9(3):e1003366
Kroll, E, S Coyle, B Dunn, G Koniges, A Aragon, J Edwards, and F Rosenzweig (2013) Starvation-associated genome restructuring can lead to reproductive isolation in yeast. PLoS One 8(7): e66414.
Ratcliff, WC, MD Herron, K Howell, JT Pentz, F Rosenzweig, M Travisano (2013) Experimental evolution of an alternating uni- and multicellular life cycle in Chlamydomonas reinhardtii. Nature Communications. 4:2742.
Piotrowski, JS, Nagarajan, E Kroll, A Stanbery, KE Chiotti, AL Kruckeberg, B Dunn, G Sherlock, F Rosenzweig. 2012. Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve. BMC Evol Biol 12:46.
Wenger, JW, J Piotrowski, S Nagarajan, K Chiotti, G Sherlock, F Rosenzweig (2011) Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genetics 7(8): e1002202.
Kinnersley, M, JW Wenger, G Sherlock, F Rosenzweig (2011) Rapid evolution of simple microbial communities in the laboratory. In, Evolutionary Biology–Concepts, Bioversity, Macroevolution and Genome Evolution. C. Pontarottti (ed.), Springer, Berlin.
Warren, AE, CM Boulianne-Larsen, CB Chandler, K Chiotto, E Kroll, SR Miller, F Taddei, I Sermet-Gaudelus, A Ferroni, K McInnerney, MJ Franklin, F Rosenzweig (2011) Genotypic and phenotypic variation in P. aeruginosa reveals signatures of secondary infection and mutator activity in certain CF patients with chronic lung infections. Infection and Immunity 79(12):4802-4818.
Kroll, E, F Rosenzweig, B Dunn (2010) Starvation-induced reproductive isolation in yeast. In, Evolutionary Biology – Concepts, Molecular and Morpholological Evolution. C. Pontarottti (ed.), Springer-Verlag, Berlin.
Kruckeberg, AL, S Nagarajan, K McInnerney, F Rosenzweig (2009) Extraction of RNA from Ca-Alginate encapsulated yeast for transcriptional profiling. Analytical Biochem. 391(2):160.
F Rosenzweig and G Sherlock (2009) Through a Glass, Clearly: Experimental evolution as a window on genome evolution. In, Experimental Evolution: Applications and Methods. M. Rose & T. Garland (eds.) UC-Berkeley Press.
Huey, RB and F Rosenzweig (2009) Laboratory evolution meets Catch-22: Balancing simplicity and realism. In, Experimental Evolution: Applications and Methods. M. Rose & T. Garland (eds.) UC-Berkeley Press.
Ramamoorthy, S, J Piotrowski, H Langner, W Holben, M Morra, RF Rosenzweig (2009) Ecology of sulfate-reducing bacteria in an iron-dominated, mining-impacted freshwater sediment, J Env Quality 38(2):1-10.
Sass, H, S Ramamoorthy, C Yarwood, H Langner, P Schumann, R Kroppenstedt, S Spring, RF Rosenzweig (2009) Characterization of novel sulfate-reducing bacteria from a metal(loid)-contaminated freshwater sediment:Description of Desulfovibrio idahonensis sp. nov. Int. J. Syst. Evol. Microbiol. 59:2208-2214.
Ramamoorthy, S., H Sass, HLangner, P Schumann, R Kroppenstedt, S Spring, J Overmann, RF Rosenzweig (2006) Desulfosporosinus lacus sp. nov., a novel sulfate-reducing bacterium isolated from pristine freshwater lake sediments. Int. J. Syst. Evol. Microbiol. 56:2729-2736.
Spring, S and RF Rosenzweig (2004) The Genera Desulfitobacterium and Desulfosporosinus: Taxonomy. In, TheProkaryotes, M. Dworkin, (ed.) Springer-Verlag, New York.
Laub, M and F Rosenzweig (2003) Transcriptional profiling in bacteria using microarrays. In Methods and Tools in Biosciences and Medicine: Prokaryotic Genomics and Genetics, Edited by M. Blot. Birkhauser-Verlag, Basel.
Cummings, DE, O Snoeyenbos-West, D Newby, A Niggemyer, D Lovley, L Achenbach, RF Rosenzweig (2003) Colonization of metal-polluted freshwater lake sediments by Geobacteraceae species as assessed by 16S rDNA analyses. Microbial Ecology 46:257-269.
Dunham, MJ, H Badrane, T Ferea, JP Adams, PO Brown, F Rosenzweig, D Botstein (2002) Characteristic genome rearrangements accompany experimental evolution of S. cerevisiae. PNAS (USA) 99(25):16144-16149.
Niggemyer, AS, S Spring, E Stackebrandt, RF Rosenzweig (2001) Isolation and characterization of a novel arsenate-reducing bacterium: Implications for arsenic mobilization and the genus Desulfitobacterium. Applied Environ Microbiology 67:5568-5580.
Cummings, DE, AW March, B Bostick, S Spring, F Caccavo, SE Fendorf, RF Rosenzweig (2000) Evidence for microbial Fe(III) reduction in anoxic, mining-impacted lake sediments (LakeCoeur d’Alene, USA). Applied Environ Microbiology 66:154-162.
Ferea, T, P Brown, D Botstein, RF Rosenzweig (1999) Systematic changes in gene expression patterns following adaptive evolution in yeast. PNAS (USA) 96(17):9721-9726.
Cummings, DE, F Caccavo, SE Fendorf, RF Rosenzweig (1999) Arsenic mobilization by a dissimilatoryFe(III) reducing bacterium. Env Sci Technol 33:723-729.
Cummings, DE, F Caccavo, S Spring, and RF Rosenzweig (1999) Ferribacterium limneticum gen. nov., sp.nov., an Fe(III)-reducing microorganism isolated from mining-impacted lakesediments. Archives Microbiol. 171:183-188.
Harrington, JM, SE Fendorf, RF Rosenzweig (1998) Biotic generation of arsenic(III) in heavy metal contaminated lake sediments. Env Sci Technol 32:2425-2430.
Brown, CJ, KI Todd, RF Rosenzweig (1998) Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evoln 15:931-942.
Harrington, JM, MJ LaForce, WC Rember, SE Fendorf, RF Rosenzweig (1998) Phase associations and mobilization of iron and trace metals in sediments of Lake Coeur d’Alene, Idaho. Env Sci Technol 32:650-656.
Rosenzweig, RF, J Adams (1994) Microbial adaptations to a variable environment: Cell-cell interactions mediate physiological and genetic differentiation. Bioessays 16:715-717.
Rosenzweig, RF, RR Sharp, DS Treves, J Adams (1994) Microbial evolution in a simple unstructured environment: Genetic differentiation in Escherichia coli. Genetics 137:903
Rosenzweig, RF (1992) Regulation of fitness in yeast overexpressing glycolytic enzymes: Responses to heat shock and nitrogen starvation. Genetical Research (Cambridge) 59:167-177.
Rosenzweig, RF (1992) Regulation of fitness in yeast overexpressing glycolytic enzymes: Parameters of growth and viability. Genetical Research (Cambridge) 59:35-48.
Modi, RI, C Wilker, RF Rosenzweig, J Adams (1991) Plasmid macro-evolution: Selection of deletions during adaptation in a glucose limited environment. Genetica 84:195-202
Kurlandzka, A, RF Rosenzweig, J Adams (1991) Identification of adaptive changes in an evolving population of Escherichia coli: The role of changes with regulatory and highly pleiotropic effects. Mol Biol Evol 8:261-281.